PaLS
Pathway and Literature Strainer
PaLS
is a tool that filters, from a list or a set of lists of
gene/clone/protein
identifiers, those that meet certain criteria related to their references to articles in PubMed, Gene Ontology terms and KEGG and Reactome pathways.
User feedback will be very appreciated. Write us
here
. Thank you.
Data Sources
The Information shown is extracted from:
Ensembl
(version 49)
PubMed
(See help for details)
KEGG
(Rel. 46.0 | Date: 04/08)
UniGene
(Build Hs #210 | Mm #170 | Rn #172)
Reactome
(Rel. 24 | Date: 12/03/08)
Gene Ontology
(Date: 03/2008)
Input
Organism
Human
Mouse
Rat
Identifier
Ensembl Gene ID
UniGene Cluster
Gene Name (HUGO)
GenBank Accession
Clone ID
Affymetrix ID
EntrezGene ID
RefSeq_RNA
RefSeq_peptide
SwissProt name
File
Filtering Criteria
PubMed
Per List
Common PubMed references to ≥
% of IDs in the list
Global
Common PubMed references to ≥
% of IDs in all lists
Global
Common PubMed references to ≥
% of IDs in ≥
% of lists
GO
Per List
Common GO terms to ≥
% of IDs in the list
Global
Common GO terms to ≥
% of IDs in all lists
Global
Common GO terms to ≥
% of IDs in ≥
% of lists
KEGG
Per List
Common KEGG pathways to ≥
% of IDs in the list
Global
Common KEGG pathways to ≥
% of IDs in all lists
Global
Common KEGG pathways to ≥
% of IDs in ≥
% of lists
Reactome
Per List
Common Reactome pathways to ≥
% of IDs in the list
Global
Common Reactome pathways to ≥
% of IDs in all lists
Global
Common Reactome pathways to ≥
% of IDs in ≥
% of lists
Last Update: April 2008. Send comments, suggestions to
webmaster
Citing PaLS
"PaLS: filtering common literature, biological terms and pathway information. Andreu Alibes, Andres Cañada, and Ramon Diaz-Uriarte Nucl.
Acids Res. 2008 36: W364-W367."