PaLS
Pathway and Literature Strainer

 
 
       

PaLS
is a tool that filters, from a list or a set of lists of gene/clone/protein identifiers, those that meet certain criteria related to their references to articles in PubMed, Gene Ontology terms and KEGG and Reactome pathways.

User feedback will be very appreciated. Write us here. Thank you.

 
 

 

 

 
   
Data Sources
       
       
        The Information shown is extracted from:
Ensembl (version 49)
PubMed (See help for details)
KEGG (Rel. 46.0 | Date: 04/08)
   UniGene (Build Hs #210 | Mm #170 | Rn #172)
Reactome (Rel. 24 | Date: 12/03/08)
Gene Ontology (Date: 03/2008)
     
 
                 
    Input        
       
     
Organism  
       
                 
     
Identifier  
     
                 
     
File  
       
                 
 
    Filtering Criteria        
       
     
 

PubMed
Per List Common PubMed references to ≥ % of IDs in the list
     
Global Common PubMed references to ≥  % of IDs in all lists
   
Global Common PubMed references to ≥  % of IDs in ≥  % of lists
     
     

GO
Per List Common GO terms to ≥  % of IDs in the list
   
Global Common GO terms to ≥  % of IDs in all lists
   
Global Common GO terms to ≥  % of IDs in ≥  % of lists
     

KEGG
Per List Common KEGG pathways to ≥  % of IDs in the list
   
Global Common KEGG pathways to ≥  % of IDs in all lists
   
Global Common KEGG pathways to ≥ % of IDs in ≥  % of lists
     

Reactome
Per List Common Reactome pathways to ≥  % of IDs in the list
   
Global Common Reactome pathways to ≥  % of IDs in all lists
   
Global Common Reactome pathways to ≥  % of IDs in ≥  % of lists



 
 
 
   
 
   
 
   
 
 
     

Last Update: April 2008. Send comments, suggestions to webmaster
Citing PaLS "PaLS: filtering common literature, biological terms and pathway information. Andreu Alibes, Andres CaƱada, and Ramon Diaz-Uriarte Nucl. Acids Res. 2008 36: W364-W367."